Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.

نویسندگان

  • Harmen H M Draisma
  • René Pool
  • Michael Kobl
  • Rick Jansen
  • Ann-Kristin Petersen
  • Anika A M Vaarhorst
  • Idil Yet
  • Toomas Haller
  • Ayşe Demirkan
  • Tõnu Esko
  • Gu Zhu
  • Stefan Böhringer
  • Marian Beekman
  • Jan Bert van Klinken
  • Werner Römisch-Margl
  • Cornelia Prehn
  • Jerzy Adamski
  • Anton J M de Craen
  • Elisabeth M van Leeuwen
  • Najaf Amin
  • Harish Dharuri
  • Harm-Jan Westra
  • Lude Franke
  • Eco J C de Geus
  • Jouke Jan Hottenga
  • Gonneke Willemsen
  • Anjali K Henders
  • Grant W Montgomery
  • Dale R Nyholt
  • John B Whitfield
  • Brenda W Penninx
  • Tim D Spector
  • Andres Metspalu
  • P Eline Slagboom
  • Ko Willems van Dijk
  • Peter A C 't Hoen
  • Konstantin Strauch
  • Nicholas G Martin
  • Gert-Jan B van Ommen
  • Thomas Illig
  • Jordana T Bell
  • Massimo Mangino
  • Karsten Suhre
  • Mark I McCarthy
  • Christian Gieger
  • Aaron Isaacs
  • Cornelia M van Duijn
  • Dorret I Boomsma
چکیده

Metabolites are small molecules involved in cellular metabolism, which can be detected in biological samples using metabolomic techniques. Here we present the results of genome-wide association and meta-analyses for variation in the blood serum levels of 129 metabolites as measured by the Biocrates metabolomic platform. In a discovery sample of 7,478 individuals of European descent, we find 4,068 genome- and metabolome-wide significant (Z-test, P < 1.09 × 10(-9)) associations between single-nucleotide polymorphisms (SNPs) and metabolites, involving 59 independent SNPs and 85 metabolites. Five of the fifty-nine independent SNPs are new for serum metabolite levels, and were followed-up for replication in an independent sample (N = 1,182). The novel SNPs are located in or near genes encoding metabolite transporter proteins or enzymes (SLC22A16, ARG1, AGPS and ACSL1) that have demonstrated biomedical or pharmaceutical importance. The further characterization of genetic influences on metabolic phenotypes is important for progress in biological and medical research.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights

Plants produce a variety of metabolites that have a critical role in growth and development. Here we present a comprehensive study of maize metabolism, combining genetic, metabolite and expression profiling methodologies to dissect the genetic basis of metabolic diversity in maize kernels. We quantify 983 metabolite features in 702 maize genotypes planted at multiple locations. We identify 1,45...

متن کامل

Common genetic variation of blood pressure traits and their relation to end-organ damage.

Study Hypothesis Initial genome-wide association studies (GWAS) for hypertension, a common cardiovascular risk factor, have delivered unexpectedly few and modest associations. The authors of the International Consortium for Blood Pressure Genome-Wide Association Studies set out to identify novel genetic variants in relation to blood pressure, intermediate phenotypes, and cardiovascular disease ...

متن کامل

NUDT15 genetic variants and 6-mercaptopurine intolerance in pediatric acute lymphoblastic leukemia: an updated review

Acute lymphoblastic leukemia (ALL) accounts for nearly 30% of pediatric cancers. The maintenance treatment for ALL comprises daily oral 6-mercaptopurine (6-MP) and weekly methotrexate (MTX). 6-MP is a purine analog that can significantly improve the long-term survival of ALL patients. Despite more than 90% of 5-year survival of childhood ALL in developed countries, treatment interruption due to...

متن کامل

Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality

Genome-wide association studies with metabolic traits (mGWAS) uncovered many genetic variants that influence human metabolism. These genetically influenced metabotypes (GIMs) contribute to our metabolic individuality, our capacity to respond to environmental challenges, and our susceptibility to specific diseases. While metabolic homeostasis in blood is a well investigated topic in large mGWAS ...

متن کامل

Genome-wide association studies and genetic architecture of common human diseases

Genome-wide association scans provide the first successful method to identify genetic variation contributing to risk for common complex disease. Progress in identifying genes associated with melanoma show complex relationships between genes for pigmentation and the development of melanoma. Novel risk loci account for only a small fraction of the genetic variation contributing to this and many o...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Nature communications

دوره 6  شماره 

صفحات  -

تاریخ انتشار 2015